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Publications 2015-2016

Aminoff, E. M., Toneva, M., Shrivastava, A., Chen, X., Misra, I., Gupta, A., & Tarr, M. J. (2015). Applying artificial vision models to human scene understanding. Frontiers in Computational Neuroscience. 2015 Feb; 9(8):1-14.. doi: 10.3389/fncom.2015.00008.


Anastassiou, C.A., Perin, R. , Buzsáki, G. , Markram, H., & Koch, C. (2015). Cell-type- and activity-dependent extracellular correlates of intracellular spiking. Journal of Neurophysiology. 2015 Jul;114(1):608-23. Epub 2015 May 20. doi: 10.1152/jn.00628.2014.


Annis, J., & Palmeri, T.J. (in preparation). Bayesian approaches to cognitive modelling (working title). Manuscript in preparation (WIRES).


Annis, J., Miller, B.J., & Palmeri, T.J. (under review). Bayesian inference with Stan: A tutorial on adding custom distributions. Manuscript under review (BRM).


Avanzino, J., Robledo Gonzalez, M., & Deák, G.O. (2015). Language skills and speed of auditory processing in young children. Center for Research in Language Technical Reports, 28(1).


Barnes, S.A., into-Duarte, A., Kappe, A., Zembrzycki, A., Metzler, A., A Mukame, A., Lucero, J., Wang, X., Sejnowski, T.J., Markou, A., & Behrens, M.M. (2015). Disruption of mGluR5 in parvalbumin-positive interneurons induces core features of neurodevelopmental disorders. Molecular Psychiatry, 20, 1161–1172; doi:10.1038/mp.2015.113; published online 11 August 2015. doi: 10.1038/mp.2015.113.


Bartol, T.M., Bromer, C., Kinney, J., Chirillo, M.A., Bourne, J.N., Harris, K.M., Sejnowski, & T.J. (2015). Nanoconnectomic upper bound on the variability of synaptic plasticity. eLIFE, Published November 30, 2015, DOI: http://dx.doi.org/10.7554/eLife.10778.


Beckage, N., Mozer, M. C., & Colunga, E. (2015). Predicting a child's trajectory of lexical acquisition. In D. C. Noelle et al. (Eds.), Proceedings of the 37th Annual Conference of the Cognitive Science Society (pp.196-201). Austin, TX: Cognitive Science Society.


Benasich, A.A., Choudhury, N., Peters, S. & Ortiz-Mantilla, S. (2015, In Press). Approaches to Early Screening and Intervention of Infants at High Risk for Developmental Language Disorders. Special Issue: IDA Perspectives on Language and Literacy: Early Identification and Treatment of Dyslexia: A Brain-based Perspective.


Buzsáki G. (2015). Our skewed sense of space.  Science, Feb; 347(6222):612-3. doi: 10.1126/science.aaa6505.


Buzsáki, G., Peyrache, & A., Kubie, J. (2015). Emergence of Cognition from Action. Cold Spring Harb Symp Quant Biol. 2014;79:41-50. doi: 10.1101/sqb.2014.79.024679. Epub 2015 Mar 9.


Buzsáki, G., & Schomburg, E.W. (2015). What does gamma coherence tell us about inter-regional neural communication? Nature Neuroscience. Feb (18):484–489 (2015); doi:10.1038/nn.3952.


Buzsáki G., Stark E. , Berényi A., Khodagholy D., Kipke D.R. , Yoon E., & Wise K.D. (2015). Tools for probing local circuits: high-density silicon probes combined with optogenetics. Neuron. 2015; 86(1):92-105. doi: http://dx.doi.org/10.1016/j.neuron.2015.01.028.


Cantiani, C., Choudhury, N., Yu, Y., Shafer, V., Schwartz, R. & Benasich, A.A. (in press). From Sensory Perception To Lexical-Semantic Processing: An ERP Study In Non-Verbal Children With Autism. PLoS One.


Cantiani, C., Riva, V., Piazza, C., Bettoni, R. Moltini, M., Choudhury, N., Marino, C. & Benasich, A.A. (in press). Auditory discrimination predicts linguistic outcome in Italian infants with and without risk for language-learning impairment. Developmental Cognitive Neuroscience.


Cho, Sun-Joo, Wilmer, J., Herzmann, G., McGugin, R.W., Fiset, D., Van Gulick, A.E., Ryan, K, & Gauthier, I. (in press). Item Response Theory Analyses of the Cambridge Face Memory Test (CFMT). Psychological Assessment. 2015 Feb 2. [Epub ahead of print].


Choudhury, N., Parascando, J.A. & Benasich, A. A. (2015). Effects of presentation rate and attention on auditory discrimination: A comparison of long-latency auditory evoked potentials in school-aged children and adults. PLoS ONE 10(9): e0138160. doi:10.1371/journal.pone.0138160.


Chua, K.-W.,& Gauthier, I. (2015). Category-Specific Learned Attentional Bias To Object Parts, Attention, Perception & Psychophysics. Attention, Perception, & Psychophysics. Jan. 2016, 78(1): 44-51. First online: 29 Dec. 2015. doi: 10.3758/s13414.


Chua, K.-W., Richler, J.J., & Gauthier, I. (2015). Holistic processing from learned attention to parts. Journal of Experimental Psychology: General, Vol 144(4), Aug 2015, 723-729. http://dx.doi.org/10.1037/xge0000063.


Church, B.A., Rice, C. L., Dovgopoly, A., Lopata, C., Thomeer, M. L., Nelson, A., & Mercado, E., III (2015). Learning, plasticity, and atypical generalization in children with autism. Psychonomic Bulletin & Review. 2015 Jan., 22(5). doi: 10.3758/s13423-014-0797-9.


de Barbaro, K., Johnson, C.M., Forster, D., & Deák, G.O. (2015). Sensorimotor decoupling contributes to triadic attention: A longitudinal investigation of mother-infant-object interactions. Child Development. doi: 10.1111/cdev.12464. Article first published online: 27 NOV 2015.


Deák, G.O. (2015). When and where do infants follow gaze?
Proceedings of International Conferences on Development and Learning and on Epigenetic Robotics. Providence, RI, USA.


Deák, G.O., & Wiseheart, M. (2015). Cognitive flexibility in young children: A general or task-specific capacity? Journal of Experimental Child Psychology, 138, 31-53. doi:10.1016/j.jecp.2015.04.003.


Dykstra, K., Salamanca, L., Lee, M., Carini, A., Salamanca, M., Forster, D., Littlewort, G., Reilly, J., Bartlett, M., & Whitehill, J. (under review). SDMath: A dataset to inform adaptive intelligent tutoring systems.


Earls, H., Curran, T., & Mittal, V.A. (2015). Social deficits in early perceptual stages in schizophrenia: A systematic review of the P100 during face processing. Schizophrenia Bulletin. Advance Access published July 14, 2015, doi:10.1093/schbul/sbv096. doi:10.1093/schbul/sbv096.


Fan, C.C., Bartsch, H., Schork, A.J., Chen, C., Wang, Y., Lo, M., Brown, T.T., Kuperman, J.M., Hagler Jr., D.J., Schork, N.J., Jernigan, T.L., & Dale, A.M. (2015). Modeling the 3D Geometry of the Cortical Surface with Genetic Ancestry. Current Biology, 25(15):1988–1992. 3 August 2015, doi: http://dx.doi.org/10.1016/j.cub.2015.06.006.


Folstein, J., Palmeri, T.J., Van Gulick, A.E., & Gauthier, I. (2015). Category learning stretches neural representations in visual cortex. Current Directions in Psychology. 2015 Feb; 24(1):17-23. doi: 10.1177/0963721414550707.


Gilaie-Dotan, S., Saygin, A.P, Lorenzi, L.J., Rees, G., & Behrmann, M. (2015).
Ventral aspect of the visual form pathway is not critical for the perception of biological motion. PNAS 2015; Published online 2015 Jan 12. doi:10.1073/pnas.1414974112.


Gupta, R., & Deák, G.O. (2015). Disarming smiles: Irrelevant happy faces slow post-error responses. Cognitive Processing. 2015, Nov;16(4):427-34. Epub 2015 Jul 21.
doi: 10.1007/s10339-015-0664-2.


Hahamy, A., Behrmann, M., & Malach, R. (2015). The idiosyncratic brain: distortion of spontaneous connectivity patterns in autism spectrum disorder. Nature Neuroscience. Published online 19 January 2015. doi:10.1038/nn.3919.


Hales, J., Broadbent, N., Velu, P., Squire, L.R., & Clark, R.E. (2015). Hippocampus, perirhinal cortex, and complex visual discriminations in rats and humans. Learning & Memory, 22, 83-91. doi: 10.1101/lm.035840.114.


Heim, S., Benasich, A.A., Wirth, N., & Keil, A. (2015). Tracking the attentional blink profile: a cross-sectional study from childhood to adolescence. Psychological Research. 2015 Jan; 79:19-27. doi: 10.1007/s00426-013-0530-8.


Heim, S., Choudhury, N., & Benasich, A.A. (2015). Electrocortical Dynamics in Children with a Language-Learning Impairment Before and After Audiovisual Training. Brain Topography. 2015 Dec 15. [Epub ahead of print], pp 1-18. PMID: 26671710.


Hernandez, M.E., Snider, J., Stevenson, C., Cauwenberghs, G., & Poizner, H. (2015). A Correlation-based Framework for Evaluating Postural Control Stochastic Dynamics.  Neural Systems and Rehabilitation Engineering, IEEE Transactions on, vol.PP, no.99, pp.1-1. 2015 May 22. [Epub ahead of print]. doi: http://dx.doi.org/10.1109/TNSRE.2015.2436344.


Hill, O., Serpell, Z., & Faison, M. (2015). The efficacy of the LearningRx cognitive training program: Modality and transfer effects. Journal of Experimental Education, 1-21. Published online: 29 Oct 2015. doi:10.1080/00220973.2015.1065218.


Khajah, M., Roads, B. D., Lindsey, R. V., Liu, Y.-E., & Mozer, M. C. (2016). Designing engaging games using Bayesian optimization. Accepted for publication, CHI 2016.


Khodagholy, D., Gelinas, J.N., Thesen, T., Doyle,W., Devinsky, O., Malliaras, G.G., & Buzsáki, G. (2015). NeuroGrid: recording action potentials from the surface of the brain. Nature Neuroscience 18, 310–315 (2015) doi:10.1038/nn.3905.


Kim, S., Dede, A. J. O., Hopkins, R. O., & Squire, L. R. (2015). Memory, scene construction, and the human hippocampus. Proceedings of the National Academy of Sciences, U. S. A., 2015 Apr 14; 112(15): 4767–4772. Published online 2015 Mar 30. doi:  10.1073/pnas.1503863112.


Krook-Magnuson E., Gelinas JN., Soltesz I., & Buzsáki (2015). Neuroelectronics and Biooptics: Closed-Loop Technologies in Neurological Disorders. JAMA Neurol. 2015 Jul;72(7):823-9. doi: 10.1001/jamaneurol.2015.0608.


Lainscsek, C., Hernandez, M.E., Poizner, H., & Sejnowski, T. (2015). Delay differential analysis of electroencephalographic data. Neural Computation. 2015 Mar; 27(3):615-27. doi: 10.1162/NECO_a_00656. Epub 2014 Aug 22. PMID: 25149701 [PubMed - in process].


Lee, W.-Y., Cho, S.-J., McGugin, R.W., Van Gulick, A.B., & Gauthier, I. (2015). Differential Item Functioning Analysis of the Vanderbilt Expertise Test for Cars (VETcar). Journal of Vision, 15(13):23. Published online 2015 Sep 29. doi:  10.1167/15.13.23. PMCID: PMC4588597.


Liao, Y., Acar, Z. A., Makeig, S., & Deák, G. O. (2015 ). EEG imaging of toddlers during dyadic turn-taking: Mu-rhythm modulation while producing or observing social actions. NeuroImage. 2015 Feb 27; 112:52-60. doi: 10.1016/j.neuroimage.2015.02.055. [Epub ahead of print].


Logan, G.D., Yamaguchi, M., & Schall, G.D., & Palmeri, T.J. (2015). Inhibitory control in mind and brain 2.0: A blocked-input model of saccadic countermanding. Psychological Review. 2015 Feb; 122, 115-147. http://dx.doi.org/10.1037/a0038893. PMID: 25706403.


Mack, M.L., & Palmeri, T.J. (2015). The dynamics of categorization: Unraveling rapid categorization. Journal of Experimental Psychology: 2015 Jun; 144(3): 551–569.. doi:  10.1037/a0039184.


Malmir, M., Sikka, K., Forster, D., Fasel, I., Movellan, J.R., and Cottrell, G.W. (2016). Deep active object recognition by joint label and action prediction, Computer Vision and Image Understanding, Available online 20 October 2016, ISSN 1077-3142. http://dx.doi.org/10.1016/j.cviu.2016.10.011.


Malmir, M., Sikka, K., Forster, D., Movellan, J., and Cottrell, G.W. (2015). Deep Q-learning for Active Recognition of GERMS: Baseline performance on a standardized dataset for active learning. In Proceedings of the British Machine Vision Conference (BMVC), BMVA Press. 161.1-161.11.


McGugin, R., Van Gulick, A., & Gauthier, I. (2015). Cortical Thickness in Fusiform Face Area Predicts Face and Object Recognition Performance. J Cogn Neurosci.
2016 Feb;28(2):282-94. doi: 10.1162/jocn_a_00891. Epub 2015 Oct 6:1-13.


McGuire L.M., Telian, G., Laboy-Juarez, K.J., Miyashita, T., Smith K, & Feldman D.E. Short time-scale sensory coding in S1 during discrimination of whisker vibrotactile sequences. Submitted.


Mercado, E., III, & Church, B. A. (2015, submitted). Simulations of atypical perceptual transformations predict heterogeneous category learning and generalization in children with autism.


Mercado, E., III, Church, B. A., Coutinho, M. V. C., Dovgopoly, A., Lopata, C., Toomey, J. A., & Thomeer, M. L. (2015). Heterogeneity in perceptual category learning by high functioning children with autism spectrum disorder. Frontiers in Integrative Neuroscience, 9, 42. doi: 10.3389/fnint.2015.00042.


Mercado, E., III, & Orduña, V. (2015). Regularities in responding during performance of a complex choice task. Learning & Behavior, 43, 323-341. doi: 10.3758/s13420-015-0182-1.


Mertens, J., Paquola, A., Ku, M., Hatch, E., Böhnke, L., Ladjevardi, S., McGrath, S., Campbell, B., Lee, H., Herdy, J.R., Gonçalves, J.T., Toda, T., Kim, Y., Winkler, J., Yao, J., Hetzer, M.W., & Gage, F. (2015). Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects. Cell Stem Cell, 17, 1–14, Dec. 3, 2015. doi: http://dx.doi.org/10.1016/j.stem.2015.09.001.


Mullen, T.R., Kothe, C.A., Chi, Y.M., Ojeda, A., Kerth, T., Makeig, S., Jung, T.P., & Cauwenberghs, G. (2015). Real-time neuroimaging and cognitive monitoring using wearable dry EEG. IEEE Trans Biomed Eng. 2015 Nov;62(11):2553-67. Epub 2015 Sep 23.
doi: 10.1109/TBME.2015.2481482.


Musacchia, G., Ortiz-Mantilla, S., Realpe-Bonilla, T., Roesler, R., Benasich, A. A. (2015). Infant Auditory Processing and Event-related Brain Oscillations. Journal of Visual Experiments (101), e52420, Published online 2015 Jul 1. doi: 10.3791/52420.


Nishimura, M., Scherf, K. S., Valentinos, Z., Tarr, M. J., & Behrmann, M. (2015). Size Precedes View: Developmental Emergence of Invariant Object Representations in LOC, Journal of Cognitive Neuroscience. 27:3, pp. 474–491. ePub ahead of print, PMID: 25244115. doi:10.1162/jocn_a_00720.


Noble, K.G., Houston, S.M., Brito, N.H., Bartsch, H., Kan, E., Kuperman, J.M., Akshoomoff, N., Amaral, D.G., Bloss, C.S., Libiger, O., Schork, N.J., Murray, S.S., Casey, B.J., Chang, L., Ernst, T.M., Frazier, J.A., Gruen, J.R., Kennedy, D.N., Zijl, P.V., Mostofsky, S., Kaufmann, W.E., Kenet, T., Dale, A.M., Jernigan, T.L, & Sowell, E.R. (2015). Family income, parental education and brain structure in children and adolescents. Nature Neuroscience. Published online 30 March, 2015. doi:10.1038/nn.3983.


Palmeri, T.J., Love, B.C., & Turner, B.M. (in preparation). Introduction to model-based cognitive neuroscience (working title). Manuscript in preparation (JMP).


Palmeri, T.J., & Mack, M.L. (2015). How experimental trial context affects perceptual categorization. Frontiers in Psychology. Front. Psychol., 2015 Feb; doi: 10.3389/fpsyg.2015.00180.


Pei, L., Mu, Y., Leblanc, M., Alaynick, W., Barish, G.D., Pankratz, M., Tseng, T.W., Kaufman, S., Liddle, C., Yu, R.T., Downes, M., Pfaff, S.D., Auwerx, J., Gage, F.H., & Evans, R.M. (2015). Dependence of Hippocampal Function on ERRγ-Regulated Mitochondrial Metabolism. Cell Metabolism, 21(4):628–636, 7 April 2015. DOI: http://dx.doi.org/10.1016/j.cmet.2015.03.004.


Peyrache, A., Lacroix, M.M., Petersen, P.C., & Buzsáki, G. (2015). Internally organized mechanisms of the head direction sense. Nature Neuroscience. 2015 March. 18(4):569-7. (Published online 02 March 2015). doi:10.1038/nn.3968.


Plank, M., Snider, J., Kaestner, E., Halgren, E., & Poizner, H. (2015). Neurocognitive stages of spatial cognitive mapping measured during free exploration of a large-scale virtual environment. Journal of Neurophysiology, 2015 Feb 1; 113(3):740-53. Epub 2014 Nov 5.
doi: 10.1152/jn.00114.2014.


Prescott, S.L., Srinivasan, R., Marchetto, M.C., Grishina, I., Narvaiza, I, Selleri, L, Gage, F.H., Swigut, T., & Wysocka, J. (2015). Enhancer divergence and cis-regulatory evolution in the human and chimp neural Rcrest. Cell, Available online 10 Sept 2015. doi:10.1016/j.cell.2015.08.036.


Purcell, B.A., & Palmeri, T.J. (under review). Relating accumulator model parameters and neural dynamics. Manuscript under review (JMP).


Richler, J.J., Floyd, R.J., & Gauthier, I (2015). About-Face on Face Recognition Ability and Holistic Processing. Journal of Vision, 15(9):15. Published online 2015 Jul 29. doi: 10.1167/15.9.15. PMCID: PMC4581616.


Richler, J.J., Palmeri, T.J., & Gauthier, I. (2015). Holistic processing does not require configural variability. Psychonomic Bulletin & Review, 22, 974-979. doi 10.3758/s13423-014-0756-5.


Ridgeway, K., Mozer, M. C., & Bowles, A. (2016). Forgetting of foreign language skills: A corpus-based analysis of online tutoring software. Cognitive Science Journal. Accepted for publication.


Roads, B. D., & Mozer, M. C. (2016). Improving human-machine cooperative classification via cognitive theories of similarity. Cognitive Science Journal. Accepted for publication.


Roads, B. D., Mozer, M. C., & Busey, T.A. (2016). Using highlighting to train attentional expertise. PLoS ONE 11(2): e0149368. doi: 10.1371/journal.pone.0149368.


Ross, D.A., Deroche, M., & Palmeri, T.J. (in preparation). Exemplar-based models of face space predict after-effects for face attributes with different natural variability (working title). Manuscript in preparation (JoV).


Ross, D.A. & Gauthier, I. (2015). Holistic processing in the composite task depends on face size. Visual Cognition, 23(5):533-545. doi:10.1080/13506285.2015.1049678.


Ross, D.A., Tamber-Rosenau, B.J., Palmeri, T.J., Zhang, J.D., Xu, Y. & Gauthier, I. (under review). High resolution fMRI reveals configural processing of cars in FFA of car experts. Manuscript under review (JNeuro).


Ruvolo, P., Messinger, D., & Movellan, J. (2015). Infants Time Their Smiles to Make Their Moms Smile. PLOS One; Sept. 23, 2015. doi: 10.1371/journal.pone.0136492.


Schultz, M.D., He, Y., Whitaker, J.W., Hariharan, M., Mukamel, E.A., Leung, D., Rajagopal, N., Nery, J.R., Urich, M.A., Chen, H., Lin, S., Lin, Y., Jung, I., Schmitt, A.D., Selvaraj, S., Ren, B., Sejnowski, T.J., Wang, W., & Ecker, J.R. (2015). Human body epigenome maps reveal noncanonical DNA methylation variation. Nature, 523, 212–216 (09 July 2015). doi:10.1038/nature14465.


Shan, H., Tong, M.H., and Cottrell, G.W. (2016) A single model explains both visual and auditory precortical coding. arXiv:1602.08486v2 [q-bio.NC].


Shen, J., & Palmeri, T.J. (2015). The perception of a face can be greater than the sum of its parts. Psychonomic Bulletin & Review, 22, 710-716. Published online: 2014 Sept 17. 10.3758/s13423-014-0726-y.


Shen, J., & Palmeri, T.J. (in preparation). Modelling individual differences in visual categorization (working title). Manuscript in preparation (VisCog).


Sikka, K., Ahmed, A.A., Diaz, D., Goodwin, M.S., Craig, K.D., Bartlett, M.S., & Huang, J.S. (2015). Automated Assessment of Children’s Postoperative Pain Using Computer Vision. Pediatrics. Published online June 1, 2015, doi: 10.1542/peds.2015-0029.


Snider, J., Lee, D., Poizner, H., & Gepshtein, S. (2015). Prospective Optimization with Limited Resources. PLoS Comput Biol, 11(9), e1004501. DOI: 10.1371/journal.pcbi.1004501.


Squire, L. R. & Wixted, J. T. (2015) Remembering. Daedalus. Journal of the American Academy of Arts and Sciences, Winter 2015, 53-66.


Tanga, X., Kima, J., Zhoua, L., Wengertb, E., Zhanga, L., Wua, Z., Carromeuc, C., Muotric, A.R., Marchettod, M.C.N., Gage, F.H., & Chen, G. (2016). KCC2 rescues functional deficits in human neurons derived from patients with Rett syndrome. Published online before print January 5, 2016, doi: 10.1073/pnas.1524013113.


Turner, B.M., Forstmann, B.U., Love, B., Palmeri, T.J., & Van Maanen, L. (under review). Approaches of analysis in model-based cognitive neuroscience. Manuscript under review (JMP).


Umakantha, A., Purcell, B.A., & Palmeri, T.J. (in preparation). Bridging circuits and behavior: Relating a spiking neural network model and the diffusion model of perceptual decision making (working title). Manuscript in preparation (PsyRev).


Urgolites, Z. J., Smith, C. N., & Squire, L. R. (2015). True and false memories, parietal cortex, and confidence judgments. Learning & Memory, 22, 557-562. doi: 10.1101/lm.038349.115.


Van Gulick, A.E., McGugin, R.W., & Gauthier, I. (2015). Measuring non visual knowledge about object categories: The Semantic Vanderbilt Expertise Test. Behavioral Research Methods, 1-19. 2015 Aug 15. [Epub ahead of print]. 10.3758/s13428-015-0637-5.


Wang, Y., Lin, Z, Shen, X., Mech, R., Miller, G., and Cottrell, G.W. (2016) Event-specific image importance. In Computer Vision and Pattern Recognition (CVPR) 2016 pp. 1-8.


Wang, P., Gauthier, I., & Cottrell, G. (2015). Are face and object recognition independent? A neurocomputational modeling exploration. Journal of Cognitive Neuroscience. 2016 Jan 7:1-17. [Epub ahead of print]. PMID: 26741802.


Wisniewski, M. G., Radell, M. L., Church, B.A., & Mercado, E., III (2015, submitted). Fading enhances perceptual learning when events are progressively differentiated.


Xu, B., & Tanaka, J. W. (2015). The cued recognition task: dissociating the abrupt onset effect from the social and arrow cueing effect. Attention, Perception, & Psychophysics. 2015 Jan; 77(1):97-110. doi: 10.3758/s13414-014-0763-7.

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